MAGEST: MAboya Gene Expression patterns and Sequence Tags
نویسندگان
چکیده
منابع مشابه
Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags
MAGEST is a database for maternal gene expression information for an ascidian, Halocynthia roretzi. The ascidian has become an animal model in developmental biological research because it shows a simple developmental process, and belongs to one of the chordate groups. Various data are deposited into the MAGEST database, e.g. the 3'- and 5'-tag sequences from the fertilized egg cDNA library, the...
متن کاملMAGEST: MAboya Gene Expression patterns and Sequence Tags
MAGEST is a database for newly identified maternal cDNAs of the ascidian, Halocynthia roretzi, which aims to examine the population of the mRNAs. We have collected 3' and 5' tag sequences of mRNAs and their expression data from whole-mount in situ hybridi-zation in early embryos. To date, we have determined more than 2000 tag-sequences of H.roretzi cDNAs and input them into public databases. Th...
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Expressed Sequence Tag (EST) analysis has pioneered genome-wide gene discovery and expression profiling. In order to establish a gene expression index in the rice cultivar indica, we sequenced and analyzed 86,136 ESTs from nine rice cDNA libraries from the super hybrid cultivar LYP9 and its parental cultivars. We assembled these ESTs into 13,232 contigs and leave 8,976 singletons. Overall, 7,49...
متن کاملMAGEST: ESTs and Gene Expression Pattern Database for Halocynthia roretzi Maternal cDNA
The Ascidian Halocynthia roretzi is a good model organism to investigate gene functions in developmental mechanisms. In the process of early embryogenesis, maternal factors stored in egg cytoplasms are known to play various significant roles [1]. Recent works have revealed that there exist cytoplasmic determinants that direct the formation of epidermis, muscle and endoderm as well as cytoplasmi...
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We present here a heuristic method toward predicting the expression specificity in the transcriptional process, which is known to be regulated in large part by promoter sequences, by observing the appearance of conserved sequence patterns in a group of known promoters, such as for housekeeping or tissue-specific genes. Statistically conserved patterns were automatically extracted from a set of ...
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2000
ISSN: 1362-4962
DOI: 10.1093/nar/28.1.133